Dear Gurus,
My question deals with a "retrieval program" used by biologists and called
SRS, so don't waste your time if you don't know what I'm speaking about...
My problem: I recently upgraded from DU3.2C to DU4.0B and I'm running
SRS4_08 (yes, I should go to SRS5...)
Yesterday I wanted to index the "emblnew" sequences (cumulated new entries
since the last release) for the first time since the OS upgrade.The input
files are in GCG format.
SRS won't run SRSBUILD with the following message:
*** Welcome to SRS, version 4.08 ***
...processing EMNEW
...processing /nuc/Embl/em_new.ref
...processing /nuc/Embl/em_new.seq
Segmentation fault (core dumped)
e__filopenerr, file could not be opened
"SRSINX:emnew_id"
e__filopenerr, file could not be opened
"SRSINX:emnew_acc"
.... and so on for all the output files
I did not change anything in SRS (.sdl files, etc...). SRSSECTION compiles
cleanly. I have sufficient disk space and swap space. Directories and files
protections are OK. The GCG files for EMNEW were created OK and I can "fetch"
entries from EMNEW.
Would you have any idea for such a behaviour from SRS? One thing I can think
of is that the accession numbers are longer than before, but this is not
really new.... Or could it be due to something new in DU4.0B?
I am really ennoyed, thanks for your help!
Jean-Loup
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| Jean-Loup Risler | |
| Universite de Versailles | Tel: 33 (0)1 39 25 45 54 |
| Lab. Genome et Informatique | Fax: 33 (0)1 39 25 45 69 |
| Batiment Buffon | |
| 45 Avenue des Etats-Unis | email: risler_at_genetique.uvsq.fr |
| 78035 Versailles Cedex France | |
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Les cerveaux sont malencontreusement pourvus d'estomac (J. Perrin)
Received on Mon Sep 01 1997 - 16:12:19 NZST